Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

Improving microstructural quantification in FIB/SEM nanotomography

Improving microstructural quantification in FIB/SEM nanotomography

Advanced nanotomographic analysis is still far from routine, and a number of challenges remain in data acquisition and post-processing. In this work, we present a number of techniques to improve the quality of the acquired data, together with easy-to-implement methods to obtain “advanced” microstructural quantifications. The techniques are applied to a solid oxide fuel cell cathode of interest to the electrochemistry community, but the methodologies are easily adaptable to a wide range of... Read more

Joshua A.Taillon, Christopher Pellegrinelli, Yi-Lin Huang, Eric D.Wachsman, Lourdes G. Salamanca-Riba

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Optical Resolution Photoacoustic Microscopy of Ovary and Fallopian Tube

Optical Resolution Photoacoustic Microscopy of Ovary and Fallopian Tube

Ovarian cancer is the leading cause of death among gynecological cancers, but is poorly amenable to preoperative diagnosis. In this study, we investigate the feasibility of “optical biopsy,” using high-optical-resolution photoacoustic microscopy (OR-PAM) to quantify the microvasculature of ovarian and fallopian tube tissue. The technique is demonstrated using excised human ovary and fallopian tube specimens imaged immediately after surgery.
This report describes the first applicatio... Read more

Bin Rao, Xiandong Leng, Yifeng Zeng, Yixiao Lin, Ruimin Chen, Qifa Zhou, Andrea R. Hagemann, Lindsay M. Kuroki, Carolyn K. McCourt, David G. Mutch, Matthew A. Powell, Ian S. Hagemann & Quing Zhu

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In situ x-ray computed tomography of zinc–air primary cells during discharge: correlating discharge rate to anode morphology

In situ x-ray computed tomography of zinc–air primary cells during discharge: correlating discharge rate to anode morphology

Given the urgent need to move to low-carbon technologies, batteries are being increasingly used in a range of applications. Lithium-ion batteries are the most widely used chemistry, but to meet the growing demand, there is a need to move beyond lithium towards alternative battery chemistries. Metal–air batteries are a group of such battery alternatives that hold promise, especially for stationary power and flexible electronics applications.

However, barriers to their widespread adopt... Read more

Jennifer Hack, Drasti Patel, Josh J Bailey, Francesco Iacoviello, Paul R Shearing, and Dan J L Brett

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3D computational anatomy of the scaphoid and its waist for use in fracture treatment

3D computational anatomy of the scaphoid and its waist for use in fracture treatment

A detailed understanding of scaphoid anatomy helps anatomic fracture reduction and optimal screw position. Therefore, we analyzed the size and shape variations of the cartilage and osseous surface, the distribution of volumetric bone mineral density (vBMD), and if the vBMD values differ between a peripheral and a central screw pathway?

Forty-three fresh frozen hand specimens (17 females, 26 males) were analysed with high-resolution peripheral quantitative computed tomography (HR-pQCT) ... Read more

Marc-Daniel Ahrend, Teun Teunis, Hansrudi Noser, Florian Schmidutz, Geoff Richards, Boyko Gueorguiev & Lukas Kamer

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Three-dimensional image based modelling of transport parameters in lithium–sulfur batteries

Three-dimensional image based modelling of transport parameters in lithium–sulfur batteries

An elemental sulfur electrode was imaged with X-ray micro and nano computed tomography and segmented into its constituent phases. Morphological parameters including phase fractions and pore and particle size distributions were calculated directly from labelled image data, and flux based simulations were performed to determine the effective molecular diffusivity of the pore phase and electrical conductivity of the conductive carbon and binder phase, D... Read more

Chun Tan, Matthew D. R. Kok , Sohrab R. Daemi , Daniel J. L. Brett and Paul R. Shearing

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Determining the bacterial cell biology of planctomycetes

Determining the bacterial cell biology of planctomycetes

Bacteria of the phylum Planctomycetes have been previously reported to possess several features that are typical of eukaryotes, such as cytosolic compartmentalization and endocytosis-like macromolecule uptake. However, recent evidence points towards a Gram-negative cell plan for Planctomycetes, although in-depth experimental analysis has been hampered by insufficient genetic tools…

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Christian Boedeker, Margarete Schüler, Greta Reintjes, Olga Jeske, Muriel C. F. van Teeseling et al.

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Analyzing the effects of powder and post-processing on porosity and properties of electron beam melted Ti-6Al-4V

Analyzing the effects of powder and post-processing on porosity and properties of electron beam melted Ti-6Al-4V

Metal additive manufacturing techniques such as the powder-bed systems are developing as a novel method for producing complex components.

This study uses synchrotron-based X-ray microtomography to investigate porosity in electron beam melted Ti-6Al-4V in the as-built and post-processed state for two different powders. The presence of gas porosity in the starting powder was shown to correlate to porosity in the as-built components. This porosity was observed to shrink after a hot isosta... Read more

Ross Cunningham, Andrea Nicolas, John Madsen, Eric Fodran, Elias Anagnostou, Michael D. Sangid & Anthony D. Rollett

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A Structure and Durability Comparison of Membrane Electrode Assembly Fabrication Methods: Self-Assembled Versus Hot-Pressed

A Structure and Durability Comparison of Membrane Electrode Assembly Fabrication Methods: Self-Assembled Versus Hot-Pressed

The most common means of fabricating membrane electrode assemblies (MEAs) for polymer electrolyte fuel cells (PEFCs) involves a hot-press step. The conditions used to perform the hot-press impacts the performance and durability of the fuel cell.

However, the hot-press process is not essential for achieving operational MEAs and some practitioners dispense with the hot-press stage altogether by using a self-assembled approach. By performing the integration of the components in-situ durin... Read more

Jennifer Hack, T. M. M. Heenan, F. Iacoviello, N. Mansor, Q. Meyer, P. Shearing, N. Brandon and D. J. L. Brett

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